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Bra005384 protein (Brassica rapa) - STRING interaction network
"Bra005384" - AT2G34890 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005384AT2G34890 (E=1e-279) | CTP synthase, putative / UTP--ammonia ligase, putative ; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen (621 aa)    
Predicted Functional Partners:
Bra027795
AT1G63660 (E=6e-286) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (530 aa)
   
 
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
     
  0.957
Bra030183
AT1G29940 (E=0.0) NRPA2 | NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1152 aa)
     
  0.944
Bra030180
AT1G29940 (E=7e-086) NRPA2 | NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding (191 aa)
     
  0.944
Bra019695
AT1G63660 (E=1e-012) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (97 aa)
   
 
  0.939
Bra039220
AT2G23970 (E=4e-121) | defense-related protein, putative (250 aa)
   
 
  0.877
Bra039219
AT2G23960 (E=1e-105) | defense-related protein, putative (370 aa)
   
 
  0.877
Bra024068
AT4G30530 (E=7e-120) | defense-related protein, putative (250 aa)
   
 
  0.877
Bra011201
AT4G30530 (E=5e-120) | defense-related protein, putative (250 aa)
   
 
  0.877
Bra010283
AT4G30530 (E=1e-122) | defense-related protein, putative (250 aa)
   
 
  0.877
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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