STRINGSTRING
Bra005386 protein (Brassica rapa) - STRING interaction network
"Bra005386" - AT2G34860 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005386AT2G34860 (E=2e-084) EDA3 | EDA3 (embryo sac development arrest 3); heat shock protein binding / unfolded protein binding (186 aa)    
Predicted Functional Partners:
Bra011635
AT4G35760 (E=4e-144) | LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vitamin K epoxide reductase (InterPro-IPR012932), Thioredoxin-like fold (InterPro-IPR012336); Has 447 Blast hits to 447 proteins in 86 species- Archae - 0; Bacteria - 179; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 237 (source- NCBI BLink). (358 aa)
     
      0.622
Bra038528
AT2G22400 (E=0.0) | NOL1/NOP2/sun family protein (810 aa)
           
  0.473
Bra030242
AT2G22400 (E=0.0) | NOL1/NOP2/sun family protein (793 aa)
           
  0.473
Bra025925
AT1G18190 (E=7e-217) GC2 | GC2 (golgin candidate 2) (648 aa)
           
  0.473
Bra019445
AT3G43230 (E=2e-162) | zinc finger (FYVE type) family protein (640 aa)
           
  0.473
Bra010854
AT1G28960 (E=7e-124) ATNUDT15, ATNUDX15 | ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase (270 aa)
           
  0.473
Bra031146
AT2G20880 (E=6e-072) | AP2 domain-containing transcription factor, putative (311 aa)
           
  0.470
Bra026280
AT4G28140 (E=2e-098) | AP2 domain-containing transcription factor, putative (293 aa)
           
  0.470
Bra010383
AT4G28140 (E=2e-109) | AP2 domain-containing transcription factor, putative (276 aa)
           
  0.470
Bra026982
AT1G12250 (E=4e-106) | thylakoid lumenal protein-related (279 aa)
     
   
  0.440
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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