STRINGSTRING
Bra005389 protein (Brassica rapa) - STRING interaction network
"Bra005389" - AT2G34820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005389AT2G34820 (E=7e-095) | basic helix-loop-helix (bHLH) family protein (288 aa)    
Predicted Functional Partners:
Bra022502
AT1G64980 (E=7e-128) | unknown protein (247 aa)
           
  0.457
Bra004107
AT1G64980 (E=1e-132) | unknown protein (253 aa)
           
  0.457
Bra023140
AT1G30825 (E=5e-148) ARPC2A, DIS2 | DIS2 (DISTORTED TRICHOMES 2); structural molecule (320 aa)
           
  0.444
Bra014893
AT1G30825 (E=1e-146) ARPC2A, DIS2 | DIS2 (DISTORTED TRICHOMES 2); structural molecule (318 aa)
           
  0.444
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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