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Bra005393 protein (Brassica rapa) - STRING interaction network
"Bra005393" - AT2G34780 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005393AT2G34780 (E=0.0) EMB1611, MEE22 | MEE22 (MATERNAL EFFECT EMBRYO ARREST 22) (1247 aa)    
Predicted Functional Partners:
Bra028272
AT5G51740 (E=7e-202) | peptidase M48 family protein (431 aa)
           
  0.479
Bra009788
AT5G24680 (E=7e-169) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Peptidase C78, ubiquitin fold modifier-specific peptidase 1 and 2 (InterPro-IPR012462); Has 157 Blast hits to 157 proteins in 66 species- Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 45; Plants - 19; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (397 aa)
           
  0.410
Bra017881
AT5G42310 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein (700 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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