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Bra005396 protein (Brassica rapa) - STRING interaction network
"Bra005396" - AT2G34750 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005396AT2G34750 (E=9e-121) | RNA polymerase I specific transcription initiation factor RRN3 family protein (628 aa)    
Predicted Functional Partners:
Bra030183
AT1G29940 (E=0.0) NRPA2 | NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1152 aa)
     
  0.959
Bra030180
AT1G29940 (E=7e-086) NRPA2 | NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding (191 aa)
     
  0.959
Bra000162
AT2G40030 (E=0.0) NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | NRPD1B; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (2059 aa)
     
  0.916
Bra014613
AT3G57660 (E=6e-023) NRPA1 | NRPA1; DNA binding / DNA-directed RNA polymerase/ zinc ion binding (128 aa)
     
  0.899
Bra007345
AT3G57660 (E=0.0) NRPA1 | NRPA1; DNA binding / DNA-directed RNA polymerase/ zinc ion binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1640 aa)
     
  0.899
Bra003294
AT3G57660 (E=3e-259) NRPA1 | NRPA1; DNA binding / DNA-directed RNA polymerase/ zinc ion binding ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1580 aa)
     
  0.899
Bra021519
AT3G13940 (E=2e-108) | DNA binding / DNA-directed RNA polymerase (428 aa)
       
  0.839
Bra039985
AT2G29540 (E=2e-025) ATRPC14, ATRPAC14 | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization (96 aa)
       
  0.709
Bra018380
AT2G29540 (E=3e-043) ATRPC14, ATRPAC14 | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/ protein dimerization (129 aa)
       
  0.709
Bra038761
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1126 aa)
     
  0.705
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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