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Bra005398 protein (Brassica rapa) - STRING interaction network
"Bra005398" - AT2G34710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005398AT2G34710 (E=0.0) PHB, ATHB14, ATHB-14, PHB-1D | PHB (PHABULOSA); DNA binding / transcription factor (849 aa)    
Predicted Functional Partners:
Bra023570
AT5G16560 (E=3e-101) KAN, KAN1 | KAN (KANADI); transcription factor (398 aa)
           
  0.606
Bra008613
AT5G16560 (E=3e-106) KAN, KAN1 | KAN (KANADI); transcription factor (291 aa)
           
  0.606
Bra040322
AT2G45190 (E=8e-107) AFO, FIL, YAB1 | AFO (ABNORMAL FLORAL ORGANS); protein binding / transcription factor/ transcription regulator (233 aa)
           
  0.574
Bra005177
AT2G37630 (E=1e-161) ATPHAN, AS1, ATMYB91, MYB91 | AS1 (ASYMMETRIC LEAVES 1); DNA binding / protein homodimerization/ transcription factor (361 aa)
       
 
  0.550
Bra000011
AT2G37630 (E=8e-081) ATPHAN, AS1, ATMYB91, MYB91 | AS1 (ASYMMETRIC LEAVES 1); DNA binding / protein homodimerization/ transcription factor (347 aa)
       
 
  0.550
Bra033844
AT1G32240 (E=6e-140) KAN2 | KAN2 (KANADI 2); DNA binding / transcription factor (392 aa)
           
  0.547
Bra023254
AT1G32240 (E=7e-109) KAN2 | KAN2 (KANADI 2); DNA binding / transcription factor (366 aa)
           
  0.547
Bra037320
AT4G00180 (E=2e-090) YAB3 | YAB3 (YABBY3); protein binding / transcription factor (238 aa)
           
  0.541
Bra027050
AT1G62360 (E=9e-163) STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHOOT MERISTEMLESS); transcription factor (382 aa)
           
  0.540
Bra033698
AT5G43810 (E=0.0) ZLL, PNH, AGO10 | ZLL (ZWILLE); translation initiation factor (974 aa)
     
   
  0.508
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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