STRINGSTRING
Bra005403 protein (Brassica rapa) - STRING interaction network
"Bra005403" - AT2G34650 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005403AT2G34650 (E=6e-214) PID, ABR | PID (PINOID); kinase/ protein kinase/ protein serine/threonine kinase (439 aa)    
Predicted Functional Partners:
Bra015983
AT1G73590 (E=1e-313) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter ; May act as a component of the auxin efflux carrier (618 aa)
     
 
  0.846
Bra008105
AT1G73590 (E=0.0) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter ; May act as a component of the auxin efflux carrier (616 aa)
     
 
  0.846
Bra026669
AT2G01420 (E=7e-294) PIN4, ATPIN4 | PIN4 (PIN-FORMED 4); auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (797 aa)
       
 
  0.744
Bra012358
AT1G23080 (E=3e-310) PIN7 | PIN7 (PIN-FORMED 7); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (603 aa)
       
 
  0.724
Bra009447
AT5G04510 (E=1e-247) PDK1, ATPDK1 | PDK1 (3’-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1); 3-phosphoinositide-dependent protein kinase/ kinase/ phosphoinositide binding / protein binding / protein kinase (490 aa)
       
0.713
Bra034125
AT3G10540 (E=2e-256) | 3-phosphoinositide-dependent protein kinase, putative (489 aa)
       
0.705
Bra029850
AT3G10540 (E=4e-251) | 3-phosphoinositide-dependent protein kinase, putative (481 aa)
       
0.704
Bra035648
AT5G57090 (E=2e-269) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (661 aa)
       
 
  0.682
Bra006834
AT5G57090 (E=2e-314) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (642 aa)
       
 
  0.682
ARF5-1
AT1G19850 (E=0.0) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (867 aa)
     
   
  0.550
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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