STRINGSTRING
Bra005404 protein (Brassica rapa) - STRING interaction network
"Bra005404" - AT2G34640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005404AT2G34640 (E=1e-244) PTAC12 | PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) (525 aa)    
Predicted Functional Partners:
Bra020935
AT4G20130 (E=1e-188) PTAC14 | PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) (664 aa)
     
 
  0.951
Bra020017
AT1G09530 (E=1e-195) PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator (494 aa)
       
 
  0.628
Bra031668
AT1G09530 (E=3e-124) PIF3, POC1, PAP3 | PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator (492 aa)
       
 
  0.626
Bra037742
AT2G43010 (E=2e-140) PIF4, SRL2 | PIF4 (phytochrome interacting factor 4); DNA binding / protein binding / transcription factor (406 aa)
       
 
  0.613
Bra012972
AT5G61270 (E=1e-106) PIF7 | PIF7 (PHYTOCHROME-INTERACTING FACTOR7); DNA binding / double-stranded DNA binding / transcription factor (670 aa)
       
      0.613
Bra007660
AT3G62090 (E=2e-108) PIL2, PIF6 | PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2); protein binding / transcription factor (422 aa)
       
      0.613
Bra007430
AT3G59060 (E=1e-141) PIL6, PIF5 | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6); DNA binding / transcription factor (426 aa)
       
      0.613
Bra000560
AT4G00050 (E=7e-110) UNE10 | UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor (388 aa)
       
      0.613
Bra000436
AT2G46970 (E=2e-150) PIL1 | PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor (404 aa)
       
      0.613
Bra011061
AT4G28800 (E=1e-058) | transcription factor (517 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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