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Bra005405 protein (Brassica rapa) - STRING interaction network
"Bra005405" - AT2G34630 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005405AT2G34630 (E=3e-174) GPPS, GPS1 | geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative (674 aa)    
Predicted Functional Partners:
Bra034620
AT4G34350 (E=7e-251) CLB6, ISPH, HDR | HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase/ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (572 aa)
   
 
  0.962
Bra011522
AT4G34350 (E=2e-246) CLB6, ISPH, HDR | HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase/ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (462 aa)
   
 
  0.962
Bra040599
AT3G02780 (E=6e-132) IPP2, IPIAT1, IDI2 | IPP2 (ISOPENTENYL PYROPHOSPHATE-DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2); isopentenyl-diphosphate delta-isomerase (287 aa)
   
 
  0.957
Bra001063
AT3G02780 (E=5e-136) IPP2, IPIAT1, IDI2 | IPP2 (ISOPENTENYL PYROPHOSPHATE-DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2); isopentenyl-diphosphate delta-isomerase (281 aa)
   
 
  0.957
Bra022156
AT5G47770 (E=6e-190) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (342 aa)
         
  0.943
Bra014828
AT3G54250 (E=1e-227) | mevalonate diphosphate decarboxylase, putative (419 aa)
   
 
  0.921
Bra007059
AT3G54250 (E=4e-227) | mevalonate diphosphate decarboxylase, putative (419 aa)
   
 
  0.921
Bra028096
AT2G18620 (E=2e-155) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (359 aa)
   
   
0.918
Bra011709
AT4G36810 (E=1e-164) GGPS1 | GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase (363 aa)
   
   
0.918
Bra011898
AT4G38460 (E=2e-138) GGR | GGR (geranylgeranyl reductase); farnesyltranstransferase (322 aa)
   
   
0.916
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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