STRINGSTRING
Bra005407 protein (Brassica rapa) - STRING interaction network
"Bra005407" - AT2G34600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005407AT2G34600 (E=2e-030) JAZ7, TIFY5B | JAZ7 (JASMONATE-ZIM-DOMAIN PROTEIN 7) (116 aa)    
Predicted Functional Partners:
Bra023399
AT5G13220 (E=3e-074) JAZ10, TIFY9, JAS1 | JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) (184 aa)
     
   
  0.596
Bra008846
AT5G13220 (E=9e-081) JAZ10, TIFY9, JAS1 | JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) (196 aa)
     
   
  0.596
Bra015880
AT1G74950 (E=4e-075) JAZ2, TIFY10B | TIFY10B (245 aa)
     
   
  0.586
Bra008172
AT1G19180 (E=8e-062) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (240 aa)
     
   
  0.586
Bra030986
AT1G17380 (E=1e-039) JAZ5, TIFY11A | JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) (299 aa)
     
   
  0.572
Bra025977
AT1G17380 (E=1e-081) JAZ5, TIFY11A | JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) (256 aa)
     
   
  0.572
Bra024998
AT5G46760 (E=2e-213) | basic helix-loop-helix (bHLH) family protein (580 aa)
     
 
  0.558
Bra003778
AT1G74950 (E=6e-055) JAZ2, TIFY10B | TIFY10B (222 aa)
     
   
  0.558
Bra016193
AT1G70700 (E=1e-063) JAZ9, TIFY7 | TIFY7 (249 aa)
     
   
  0.547
Bra007937
AT1G70700 (E=9e-085) JAZ9, TIFY7 | TIFY7 (250 aa)
     
   
  0.547
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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