STRINGSTRING
Bra005408 protein (Brassica rapa) - STRING interaction network
"Bra005408" - AT1G36310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005408AT1G36310 (E=6e-103) | methyltransferase (315 aa)    
Predicted Functional Partners:
Bra012027
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.955
Bra031378
AT1G22270 (E=2e-040) | unknown protein (127 aa)
     
 
  0.955
Bra012318
AT1G22270 (E=2e-049) | unknown protein (125 aa)
     
 
  0.955
Bra012027.1-P
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.955
Bra024550
AT1G22940 (E=3e-253) TH1, TH-1, THIE | TH1 (THIAMINE REQUIRING 1); hydroxymethylpyrimidine kinase/ phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase (526 aa)
         
  0.729
Bra039402
AT3G13440 (E=3e-116) | methyltransferase/ nucleic acid binding (310 aa)
   
  0.697
Bra039401
AT3G13440 (E=5e-062) | methyltransferase/ nucleic acid binding (128 aa)
   
  0.697
Bra027435
AT3G13440 (E=1e-107) | methyltransferase/ nucleic acid binding (249 aa)
   
  0.697
Bra040431
AT3G63110 (E=2e-161) ATIPT3, IPT3 | ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3); ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups (334 aa)
   
   
  0.687
Bra037537
AT3G19160 (E=3e-122) ATIPT8, PGA22 | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES); adenylate dimethylallyltransferase (324 aa)
   
   
  0.687
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]