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Bra005413 protein (Brassica rapa) - STRING interaction network
"Bra005413" - AT2G34570 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005413AT2G34570 (E=5e-031) MEE21 | MEE21 (maternal effect embryo arrest 21) (120 aa)    
Predicted Functional Partners:
Bra028656
AT5G08420 (E=6e-116) | RNA binding ; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (386 aa)
     
  0.991
Bra005702
AT5G08420 (E=3e-056) | RNA binding (209 aa)
     
  0.991
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
    0.974
Bra015013
AT3G24080 (E=1e-065) | KRR1 family protein (628 aa)
     
 
  0.971
Bra040830
AT3G22660 (E=6e-127) | rRNA processing protein-related (294 aa)
     
        0.969
Bra033354
AT1G02870 (E=1e-095) | unknown protein (194 aa)
     
        0.969
Bra031190
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (972 aa)
     
        0.969
Bra030298
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (921 aa)
     
        0.969
Bra023878
AT1G23280 (E=4e-015) | MAK16 protein-related (96 aa)
     
        0.969
Bra023812
AT3G22660 (E=3e-124) | rRNA processing protein-related (296 aa)
     
        0.969
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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