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Bra005419 protein (Brassica rapa) - STRING interaction network
"Bra005419" - AT2G34510 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005419AT2G34510 (E=2e-204) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- anchored to membrane; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF642 (InterPro-IPR006946), Galactose-binding like (InterPro-IPR008979); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G29980.1); Has 177 Blast hits to 163 proteins in 15 species- Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (400 aa)    
Predicted Functional Partners:
Bra017781
AT4G36750 (E=2e-093) | quinone reductase family protein (265 aa)
           
  0.483
Bra035008
AT3G44330 (E=4e-263) | INVOLVED IN- protein processing; LOCATED IN- mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nicalin (InterPro-IPR016574), EF-HAND 1 (InterPro-IPR018247), Nicastrin (InterPro-IPR008710); Has 192 Blast hits to 192 proteins in 79 species- Archae - 6; Bacteria - 5; Metazoa - 124; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). ; May antagonize Nodal signaling and subsequent organization of axial structures during mesoder [...] (563 aa)
     
   
  0.469
Bra019457
AT3G44330 (E=7e-266) | INVOLVED IN- protein processing; LOCATED IN- mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nicalin (InterPro-IPR016574), EF-HAND 1 (InterPro-IPR018247), Nicastrin (InterPro-IPR008710); Has 192 Blast hits to 192 proteins in 79 species- Archae - 6; Bacteria - 5; Metazoa - 124; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). ; May antagonize Nodal signaling and subsequent organization of axial structures during mesoder [...] (562 aa)
     
   
  0.469
Bra025735
AT1G19370 (E=3e-256) | unknown protein (602 aa)
           
  0.444
Bra003769
AT1G75140 (E=7e-230) | unknown protein (610 aa)
           
  0.444
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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