STRINGSTRING
Bra005421.1-P protein (Brassica rapa) - STRING interaction network
"Bra005421.1-P" - AT2G34480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005421.1-PAT2G34480 (E=1e-101) | 60S ribosomal protein L18A (RPL18aB) (178 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.999
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
     
  0.999
Bra039150
AT3G02080 (E=1e-078) | 40S ribosomal protein S19 (RPS19A) (143 aa)
   
  0.999
Bra035939
AT5G61170 (E=9e-064) | 40S ribosomal protein S19 (RPS19C) (143 aa)
   
  0.999
Bra029331
AT5G61170 (E=5e-063) | 40S ribosomal protein S19 (RPS19C) (123 aa)
   
  0.999
Bra021478
AT3G02080 (E=7e-078) | 40S ribosomal protein S19 (RPS19A) (143 aa)
   
  0.999
Bra012980
AT5G61170 (E=2e-078) | 40S ribosomal protein S19 (RPS19C) (143 aa)
   
  0.999
Bra001028
AT3G02080 (E=1e-077) | 40S ribosomal protein S19 (RPS19A) (143 aa)
   
  0.999
Bra014721
AT3G55770 (E=6e-101) | LIM domain-containing protein (311 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]