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Bra005425 protein (Brassica rapa) - STRING interaction network
"Bra005425" - AT2G34430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005425AT2G34430 (E=2e-149) LHB1B1, LHCB1.4 | LHB1B1; chlorophyll binding (266 aa)    
Predicted Functional Partners:
Bra040977
ATCG00680 (E=3e-225) PSBB | encodes for CP47, subunit of the photosystem II reaction center. ; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water-plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation (486 aa)
       
      0.891
Bra016470
AT1G20340 (E=5e-066) DRT112, PETE2 | DRT112; copper ion binding / electron carrier ; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I (165 aa)
     
   
  0.608
Bra012226
AT1G20340 (E=2e-057) DRT112, PETE2 | DRT112; copper ion binding / electron carrier ; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I (174 aa)
     
   
  0.608
Bra036950
AT1G44575 (E=2e-106) NPQ4, PSBS | NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding (265 aa)
     
 
  0.592
Bra014024
AT1G44575 (E=3e-109) NPQ4, PSBS | NPQ4 (NONPHOTOCHEMICAL QUENCHING); chlorophyll binding / xanthophyll binding (265 aa)
     
 
  0.592
Bra014106
AT2G47450 (E=7e-149) CAO, CPSRP43 | CAO (CHAOS); chromatin binding (380 aa)
     
 
  0.578
Bra030181
AT1G29930 (E=5e-140) CAB1, AB140, CAB140, LHCB1.3 | CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding (267 aa)
       
   
0.562
Bra010807
AT1G29920 (E=1e-149) CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL A/B-BINDING PROTEIN 2); chlorophyll binding (267 aa)
       
   
0.562
Bra029563
AT4G05180 (E=6e-086) PSBQ, PSBQ-2, PSII-Q | PSBQ-2; calcium ion binding (226 aa)
     
   
  0.551
Bra025812
AT1G20340 (E=5e-050) DRT112, PETE2 | DRT112; copper ion binding / electron carrier ; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I (135 aa)
     
   
  0.539
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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