STRINGSTRING
Bra005431 protein (Brassica rapa) - STRING interaction network
"Bra005431" - AT1G29740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005431AT1G29740 (E=6e-056) | kinase (163 aa)    
Predicted Functional Partners:
Bra018220
AT3G46160 (E=7e-092) | protein kinase-related (410 aa)
   
          0.501
Bra005653
AT2G42550 (E=4e-076) | protein kinase family protein (277 aa)
   
          0.462
Bra022782
AT2G41910 (E=2e-062) | protein kinase family protein (305 aa)
   
          0.461
Bra004659
AT2G41930 (E=6e-118) | ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (336 aa)
   
          0.456
Bra018276
AT2G41920 (E=4e-114) | protein kinase family protein (329 aa)
   
          0.445
Bra014070
AT2G42550 (E=4e-057) | protein kinase family protein (255 aa)
   
          0.441
Bra018262
AT2G41920 (E=2e-115) | protein kinase family protein (322 aa)
   
          0.427
Bra016901
AT2G41930 (E=3e-122) | ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (367 aa)
   
          0.420
Bra022800
AT2G41910 (E=1e-095) | protein kinase family protein (331 aa)
   
          0.419
Bra005652
AT2G42550 (E=2e-074) | protein kinase family protein (287 aa)
   
          0.417
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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