STRINGSTRING
Bra005434 protein (Brassica rapa) - STRING interaction network
"Bra005434" - AT2G34357 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005434AT2G34357 (E=0.0) | binding (1266 aa)    
Predicted Functional Partners:
Bra039653
AT1G42440 (E=1e-300) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G06720.1); Has 2447 Blast hits to 1812 proteins in 205 species- Archae - 0; Bacteria - 115; Metazoa - 903; Fungi - 423; Plants - 100; Viruses - 53; Other Eukaryotes - 853 (source- NCBI BLink). (773 aa)
     
 
  0.998
Bra018815
AT1G42440 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G06720.1); Has 2447 Blast hits to 1812 proteins in 205 species- Archae - 0; Bacteria - 115; Metazoa - 903; Fungi - 423; Plants - 100; Viruses - 53; Other Eukaryotes - 853 (source- NCBI BLink). (769 aa)
     
 
  0.998
Bra038690
AT3G11964 (E=0.0) | RNA binding (1948 aa)
     
 
  0.998
Bra034795
AT3G11964 (E=0.0) | RNA binding (1930 aa)
     
 
  0.998
Bra038327
AT1G69070 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nop14-like protein (InterPro-IPR007276); Has 64668 Blast hits to 30830 proteins in 1152 species- Archae - 207; Bacteria - 18692; Metazoa - 20758; Fungi - 6782; Plants - 2177; Viruses - 523; Other Eukaryotes - 15529 (source- NCBI BLink). (904 aa)
     
 
  0.997
Bra018437
AT1G10490 (E=0.0) | unknown protein (1024 aa)
     
      0.997
Bra007367
AT3G57940 (E=0.0) | unknown protein (1021 aa)
     
      0.997
Bra031190
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (972 aa)
     
 
  0.997
Bra030298
AT2G21440 (E=0.0) | RNA recognition motif (RRM)-containing protein (921 aa)
     
 
  0.997
Bra032998
AT1G33390 (E=0.0) | helicase domain-containing protein (1237 aa)
     
 
  0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (13%) [HD]