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Bra005439 protein (Brassica rapa) - STRING interaction network
"Bra005439" - AT2G34260 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005439AT2G34260 (E=3e-161) | transducin family protein / WD-40 repeat family protein (348 aa)    
Predicted Functional Partners:
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
      0.910
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
      0.910
Bra020884
AT4G21100 (E=0.0) DDB1B | DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding (1282 aa)
     
      0.627
Bra029577
AT4G05420 (E=0.0) DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding (1086 aa)
       
      0.625
Bra037701
AT2G43560 (E=1e-080) | immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (216 aa)
     
      0.623
Bra034761
AT3G12345 (E=1e-040) | unknown protein (178 aa)
     
      0.623
Bra031018
AT1G18170 (E=2e-082) | immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (252 aa)
     
      0.623
Bra029815
AT3G10060 (E=1e-100) | immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative (231 aa)
     
      0.623
Bra025844
AT1G20810 (E=6e-104) | immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (230 aa)
     
      0.623
Bra025447
AT3G12340 (E=8e-076) | FK506 binding / peptidyl-prolyl cis-trans isomerase (464 aa)
     
      0.623
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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