STRINGSTRING
Bra005440 protein (Brassica rapa) - STRING interaction network
"Bra005440" - AT4G19000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005440AT4G19000 (E=2e-080) | IWS1 C-terminus family protein (390 aa)    
Predicted Functional Partners:
Bra022478
AT1G65440 (E=0.0) GTB1 | GTB1; RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator (1609 aa)
     
 
  0.969
Bra004114
AT1G65440 (E=0.0) GTB1 | GTB1; RNA binding / hydrolase, acting on ester bonds / transcription elongation regulator (1594 aa)
     
 
  0.969
Bra010339
AT4G29060 (E=7e-135) emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor (633 aa)
     
 
  0.924
Bra019342
AT4G22970 (E=0.0) AESP | AESP (ARABIDOPSIS HOMOLOG OF SEPARASE); peptidase (2146 aa)
       
      0.901
Bra013665
AT4G22970 (E=0.0) AESP | AESP (ARABIDOPSIS HOMOLOG OF SEPARASE); peptidase (2166 aa)
       
      0.901
Bra038761
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1126 aa)
     
      0.864
Bra022279
AT3G23780 (E=0.0) NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1169 aa)
     
      0.864
Bra021293
AT3G23780 (E=9e-028) NRPD2A, DRD2, NRPD2, DMS2, NRPE2 | NRPD2A; DNA binding / DNA-directed RNA polymerase (133 aa)
     
      0.864
Bra020911
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1195 aa)
     
      0.864
Bra020873
AT4G21710 (E=0.0) NRPB2, EMB1989, RPB2 | NRPB2; DNA binding / DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1304 aa)
     
      0.864
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (11%) [HD]