STRINGSTRING
Bra005443 protein (Brassica rapa) - STRING interaction network
"Bra005443" - AT2G34220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005443AT2G34220 (E=4e-210) MEE20 | MEE20 (maternal effect embryo arrest 20) (745 aa)    
Predicted Functional Partners:
Bra032407
AT1G30600 (E=0.0) | subtilase family protein (836 aa)
           
  0.606
Bra020942.1-P
AT4G19940 (E=4e-112) | F-box family protein (396 aa)
           
  0.606
Bra012529
AT4G19930 (E=5e-107) | F-box family protein (438 aa)
           
  0.606
Bra012527
AT4G19930 (E=5e-079) | F-box family protein (319 aa)
           
  0.606
Bra022994
AT2G34840 (E=3e-152) | coatomer protein epsilon subunit family protein / COPE family protein (293 aa)
           
  0.604
Bra021935
AT2G34840 (E=3e-150) | coatomer protein epsilon subunit family protein / COPE family protein (293 aa)
           
  0.604
Bra003988
AT1G28760 (E=6e-168) | unknown protein (480 aa)
           
  0.604
Bra002916
AT1G28710 (E=7e-143) | unknown protein (340 aa)
           
  0.573
Bra005390
AT2G34810 (E=2e-279) | FAD-binding domain-containing protein (539 aa)
           
  0.552
Bra032410
AT1G30630 (E=1e-147) | coatomer protein epsilon subunit family protein / COPE family protein (293 aa)
           
  0.493
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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