STRINGSTRING
Bra005449 protein (Brassica rapa) - STRING interaction network
"Bra005449" - AT2G34160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005449AT2G34160 (E=5e-055) | nucleic acid binding (130 aa)    
Predicted Functional Partners:
Bra031295
AT3G21670 (E=2e-251) | nitrate transporter (NTP3) (584 aa)
           
  0.531
Bra023868
AT3G21670 (E=1e-145) | nitrate transporter (NTP3) (578 aa)
           
  0.501
Bra040191
AT3G04480 (E=0.0) | endoribonuclease (712 aa)
           
  0.431
Bra001106
AT3G04480 (E=0.0) | endoribonuclease (719 aa)
           
  0.431
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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