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Bra005450 protein (Brassica rapa) - STRING interaction network
"Bra005450" - AT2G34150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005450AT2G34150 (E=8e-257) WAVE1 | WAVE1; actin monomer binding (888 aa)    
Predicted Functional Partners:
Bra030221
AT2G22640 (E=5e-029) HSPC300, BRK1 | BRK1 (BRICK1) (86 aa)
       
  0.971
Bra006457
AT5G18410 (E=0.0) PIR, KLK, PIR121, SRA1, PIRP | PIR121; transcription activator (1273 aa)
     
  0.970
Bra005368
AT2G35110 (E=0.0) GRL, NAP1, NAPP | GRL (GNARLED); transcription activator (1399 aa)
     
  0.962
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
       
 
  0.881
Bra023140
AT1G30825 (E=5e-148) ARPC2A, DIS2 | DIS2 (DISTORTED TRICHOMES 2); structural molecule (320 aa)
       
  0.686
Bra014893
AT1G30825 (E=1e-146) ARPC2A, DIS2 | DIS2 (DISTORTED TRICHOMES 2); structural molecule (318 aa)
       
  0.686
Bra039097
AT3G27000 (E=3e-229) ARP2, ATARP2, WRM | ARP2 (ACTIN RELATED PROTEIN 2); protein binding / structural constituent of cytoskeleton (389 aa)
       
  0.657
Bra024373
AT4G01710 (E=9e-068) CRK, ARPC5 | CRK (CROOKED); actin binding ; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks (135 aa)
         
  0.642
Bra012763
AT4G15802 (E=1e-027) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Heat shock factor binding 1 (InterPro-IPR009643); Has 178 Blast hits to 178 proteins in 62 species- Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink). (109 aa)
       
      0.613
Bra019815
AT1G13180 (E=1e-234) DIS1, ARP3, ATARP3 | DIS1 (DISTORTED TRICHOMES 1); ATP binding / actin binding / protein binding / structural constituent of cytoskeleton (427 aa)
       
  0.596
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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