STRINGSTRING
Bra005459 protein (Brassica rapa) - STRING interaction network
"Bra005459" - AT2G34050 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005459AT2G34050 (E=1e-090) | INVOLVED IN- protein complex assembly; LOCATED IN- mitochondrion, chloroplast; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 9 growth stages; CONTAINS InterPro DOMAIN/s- ATP11 (InterPro-IPR010591); Has 224 Blast hits to 224 proteins in 121 species- Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 80; Plants - 18; Viruses - 0; Other Eukaryotes - 39 (source- NCBI BLink). (224 aa)    
Predicted Functional Partners:
Bra025555
AT5G40660 (E=2e-148) | ATP12 protein-related (325 aa)
     
 
  0.820
Bra018360
AT5G40660 (E=1e-019) | ATP12 protein-related (75 aa)
     
 
  0.820
Bra028649
AT5G08680 (E=6e-268) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (564 aa)
     
 
  0.698
Bra028648
AT5G08680 (E=7e-263) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (555 aa)
     
 
  0.698
Bra009363
AT5G08670 (E=7e-276) | ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism ; Produces ATP from ADP in the presence of a proton gradient across the membrane (555 aa)
     
 
  0.698
Bra009360
AT5G08670 (E=3e-275) | ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism ; Produces ATP from ADP in the presence of a proton gradient across the membrane (553 aa)
     
 
  0.698
Bra006014
AT5G08680 (E=1e-215) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (738 aa)
     
 
  0.698
Bra006013
AT5G08690 (E=1e-281) | ATP synthase beta chain 2, mitochondrial ; Produces ATP from ADP in the presence of a proton gradient across the membrane (554 aa)
     
 
  0.698
Bra022912
AT3G11380 (E=8e-041) | pentatricopeptide (PPR) repeat-containing protein (879 aa)
     
   
  0.532
Bra018503
AT4G04640 (E=2e-150) ATPC1 | ATPC1; enzyme regulator (504 aa)
     
   
  0.512
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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