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Bra005460 protein (Brassica rapa) - STRING interaction network
"Bra005460" - AT2G34040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005460AT2G34040 (E=1e-091) | apoptosis inhibitory 5 (API5) family protein (336 aa)    
Predicted Functional Partners:
Bra011842
AT4G39680 (E=7e-119) | SAP domain-containing protein (329 aa)
     
 
  0.768
Bra010668
AT4G39680 (E=9e-158) | SAP domain-containing protein (597 aa)
     
 
  0.768
Bra020834
AT4G22720 (E=3e-027) | glycoprotease M22 family protein (98 aa)
       
      0.619
Bra013635
AT4G22720 (E=2e-195) | glycoprotease M22 family protein (424 aa)
       
      0.619
Bra029532
AT4G04950 (E=5e-091) | thioredoxin family protein (339 aa)
       
      0.570
Bra027220
AT3G15660 (E=3e-083) ATGRX4, GRX4 | GRX4 (GLUTAREDOXIN 4); metal ion binding (171 aa)
       
      0.570
Bra021125
AT3G15660 (E=4e-073) ATGRX4, GRX4 | GRX4 (GLUTAREDOXIN 4); metal ion binding (167 aa)
       
      0.570
Bra007110
AT3G54900 (E=5e-063) CXIP1, ATGRXCP | CXIP1 (CAX INTERACTING PROTEIN 1); antiporter/ glutathione disulfide oxidoreductase (174 aa)
       
      0.570
Bra003199
AT3G54900 (E=4e-066) CXIP1, ATGRXCP | CXIP1 (CAX INTERACTING PROTEIN 1); antiporter/ glutathione disulfide oxidoreductase (181 aa)
       
      0.570
Bra000810
AT4G04950 (E=4e-116) | thioredoxin family protein (476 aa)
       
      0.570
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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