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ARF3-1 protein (Brassica rapa) - STRING interaction network
"ARF3-1" - AT2G33860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARF3-1AT2G33860 (E=2e-272) ETT, ARF3 | ETT (ETTIN); DNA binding / transcription factor ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (605 aa)    
Predicted Functional Partners:
Bra031850
AT5G65670 (E=5e-082) IAA9 | IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (292 aa)
       
  0.999
Bra030219
AT2G22670 (E=1e-083) IAA8 | IAA8; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (266 aa)
       
    0.981
Bra035311
AT5G42630 (E=4e-085) KAN4, ATS | ATS (ABERRANT TESTA SHAPE); DNA binding / transcription factor (624 aa)
       
 
  0.923
Bra022934
AT2G33310 (E=1e-098) IAA13 | IAA13; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (242 aa)
         
  0.903
Bra005508
AT2G33310 (E=6e-082) IAA13 | IAA13; transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (254 aa)
         
  0.903
Bra022164
AT3G16500 (E=3e-117) PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (285 aa)
         
  0.900
Bra021184
AT3G16500 (E=8e-125) PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (269 aa)
         
  0.900
Bra018938
AT1G51950 (E=2e-108) IAA18 | IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (253 aa)
         
  0.900
Bra014303
AT1G51950 (E=1e-114) IAA18 | IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (270 aa)
         
  0.900
Bra001634
AT3G16500 (E=5e-121) PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (272 aa)
         
  0.900
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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