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Bra005469 protein (Brassica rapa) - STRING interaction network
"Bra005469" - AT2G33830 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005469AT2G33830 (E=1e-048) | dormancy/auxin associated family protein (107 aa)    
Predicted Functional Partners:
Bra040572
AT4G16360 (E=1e-127) | AMP-activated protein kinase (291 aa)
     
   
  0.512
Bra020154
AT5G21170 (E=1e-119) | 5’-AMP-activated protein kinase beta-2 subunit, putative (279 aa)
     
   
  0.446
Bra002366
AT5G21170 (E=2e-130) | 5’-AMP-activated protein kinase beta-2 subunit, putative (285 aa)
     
   
  0.446
Bra012725
AT4G16360 (E=2e-128) | AMP-activated protein kinase (285 aa)
     
   
  0.422
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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