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Bra005475 protein (Brassica rapa) - STRING interaction network
"Bra005475" - AT2G33740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005475AT2G33740 (E=6e-058) CUTA | CUTA; copper ion binding (185 aa)    
Predicted Functional Partners:
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
   
   
  0.760
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
              0.557
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
              0.557
Bra034087
AT3G09820 (E=3e-185) ADK1, ATADK1 | ADK1 (adenosine kinase 1); adenosine kinase/ copper ion binding (344 aa)
              0.437
Bra032442
AT1G06030 (E=2e-044) | pfkB-type carbohydrate kinase family protein (117 aa)
              0.437
Bra030634
AT1G06020 (E=1e-167) | pfkB-type carbohydrate kinase family protein (347 aa)
              0.437
Bra029158
AT5G51830 (E=2e-155) | pfkB-type carbohydrate kinase family protein (343 aa)
              0.437
Bra028279
AT5G51830 (E=3e-150) | pfkB-type carbohydrate kinase family protein (343 aa)
              0.437
Bra026685
AT1G17160 (E=6e-046) | pfkB-type carbohydrate kinase family protein (338 aa)
              0.437
Bra026335
AT4G27600 (E=2e-212) | pfkB-type carbohydrate kinase family protein (460 aa)
              0.437
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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