STRINGSTRING
Bra005489 protein (Brassica rapa) - STRING interaction network
"Bra005489" - AT2G33510 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005489AT2G33510 (E=4e-056) | protein binding (197 aa)    
Predicted Functional Partners:
Bra003439
AT3G61150 (E=0.0) HDG1, HD-GL2-1 | HDG1 (HOMEODOMAIN GLABROUS 1); DNA binding / transcription factor (785 aa)
       
 
  0.655
Bra029527
AT4G04890 (E=0.0) PDF2 | PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (745 aa)
       
 
  0.491
Bra037355
AT4G00730 (E=0.0) ANL2, AHDP | ANL2 (ANTHOCYANINLESS 2); transcription factor/ transcription regulator (790 aa)
       
 
  0.485
Bra032478
AT1G05230 (E=0.0) HDG2 | HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor (719 aa)
       
 
  0.485
Bra020872
AT4G21750 (E=0.0) ATML1 | ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor (748 aa)
       
 
  0.485
Bra015401
AT1G05230 (E=0.0) HDG2 | HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor (720 aa)
       
 
  0.485
Bra004934
AT3G61150 (E=2e-283) HDG1, HD-GL2-1 | HDG1 (HOMEODOMAIN GLABROUS 1); DNA binding / transcription factor (786 aa)
       
 
  0.485
Bra036405
AT2G15090 (E=4e-242) KCS8 | KCS8 (3-KETOACYL-COA SYNTHASE 8); acyltransferase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (461 aa)
           
  0.449
Bra036760
AT1G35460 (E=5e-075) | basic helix-loop-helix (bHLH) family protein (239 aa)
           
  0.408
Bra028088
AT1G35460 (E=8e-072) | basic helix-loop-helix (bHLH) family protein (266 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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