STRINGSTRING
Bra005494 protein (Brassica rapa) - STRING interaction network
"Bra005494" - AT2G33460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005494AT2G33460 (E=3e-074) RIC1 | RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1); protein binding (216 aa)    
Predicted Functional Partners:
Bra011578
AT4G35020 (E=2e-100) ARAC3, ROP6, RHO1PS, ATROP6 | ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase (198 aa)
     
 
  0.887
Bra008479
AT1G80350 (E=1e-247) ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding ; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays (528 aa)
       
      0.625
Bra003561
AT1G80350 (E=9e-239) ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding ; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays (531 aa)
       
      0.625
Bra022979
AT2G34560 (E=6e-182) | katanin, putative (577 aa)
       
      0.612
Bra005414
AT2G34560 (E=2e-201) | katanin, putative (392 aa)
       
      0.612
Bra038892
AT2G17800 (E=9e-097) ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding (197 aa)
     
 
  0.555
Bra036819
AT3G51300 (E=1e-097) ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding (197 aa)
     
 
  0.555
Bra012858
AT3G51300 (E=1e-097) ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding (197 aa)
     
 
  0.555
Bra026686
AT1G17140 (E=3e-139) | tropomyosin-related (339 aa)
       
 
  0.550
Bra005500
AT2G33385 (E=5e-065) arpc2b | arpc2b (actin-related protein C2B); structural molecule (319 aa)
           
  0.475
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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