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Bra005500 protein (Brassica rapa) - STRING interaction network
"Bra005500" - AT2G33385 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005500AT2G33385 (E=5e-065) arpc2b | arpc2b (actin-related protein C2B); structural molecule (319 aa)    
Predicted Functional Partners:
Bra024373
AT4G01710 (E=9e-068) CRK, ARPC5 | CRK (CROOKED); actin binding ; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks (135 aa)
     
  0.996
Bra022818
AT2G30910 (E=2e-202) ARPC1A, ARPC1 | ARPC1A (ACTIN-RELATED PROTEIN C1A); actin binding / nucleotide binding (379 aa)
     
  0.994
Bra032763
AT4G14147 (E=3e-057) ARPC4 | ARPC4; protein binding (141 aa)
     
  0.994
Bra027158
AT1G60440 (E=4e-164) ATCOAA, ATPANK1 | ATPANK1 (PANTOTHENATE KINASE 1); pantothenate kinase (582 aa)
     
  0.988
Bra019815
AT1G13180 (E=1e-234) DIS1, ARP3, ATARP3 | DIS1 (DISTORTED TRICHOMES 1); ATP binding / actin binding / protein binding / structural constituent of cytoskeleton (427 aa)
     
  0.982
Bra016738
AT1G13180 (E=6e-235) DIS1, ARP3, ATARP3 | DIS1 (DISTORTED TRICHOMES 1); ATP binding / actin binding / protein binding / structural constituent of cytoskeleton (427 aa)
     
  0.982
Bra039097
AT3G27000 (E=3e-229) ARP2, ATARP2, WRM | ARP2 (ACTIN RELATED PROTEIN 2); protein binding / structural constituent of cytoskeleton (389 aa)
     
  0.981
Bra025243
AT3G27000 (E=5e-115) ARP2, ATARP2, WRM | ARP2 (ACTIN RELATED PROTEIN 2); protein binding / structural constituent of cytoskeleton (366 aa)
     
  0.981
Bra038441
AT4G14145 (E=1e-046) | unknown protein (126 aa)
     
  0.979
Bra010747
AT4G14145 (E=2e-044) | unknown protein (120 aa)
     
  0.979
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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