STRINGSTRING
Bra005501 protein (Brassica rapa) - STRING interaction network
"Bra005501" - AT2G33380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005501AT2G33380 (E=3e-114) RD20 | RD20 (RESPONSIVE TO DESSICATION 20); calcium ion binding (239 aa)    
Predicted Functional Partners:
Bra016195
AT1G70670 (E=8e-093) | caleosin-related family protein (192 aa)
     
 
 
0.557
Bra007934
AT1G70670 (E=2e-093) | caleosin-related family protein (192 aa)
     
 
 
0.557
Bra003948
AT1G70670 (E=2e-095) | caleosin-related family protein (192 aa)
     
 
 
0.557
Bra012788
AT4G15440 (E=8e-180) HPL1, CYP74B2 | HPL1 (HYDROPEROXIDE LYASE 1); electron carrier/ heme binding / iron ion binding / monooxygenase (489 aa)
           
  0.471
Bra029121
AT5G52300 (E=9e-090) RD29B, LTI65 | LTI65 (LOW-TEMPERATURE-INDUCED 65) (659 aa)
     
   
  0.410
Bra001002
AT3G01570 (E=5e-071) | glycine-rich protein / oleosin (193 aa)
     
   
  0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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