STRINGSTRING
Bra005503 protein (Brassica rapa) - STRING interaction network
"Bra005503" - AT2G33350 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005503AT2G33350 (E=5e-145) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 7 plant structures; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s- CCT domain (InterPro-IPR010402); BEST Arabidopsis thaliana protein match is- zinc finger CONSTANS-related (TAIR-AT1G04500.1); Has 7688 Blast hits to 4734 proteins in 129 species- Archae - 8; Bacteria - 25; Metazoa - 148; Fungi - 118; Plants - 919; Viruses - 0; Other Eukaryotes - 6470 (source- NCBI BLink). (396 aa)    
Predicted Functional Partners:
Bra040941
AT2G18550 (E=8e-077) HB-2, ATHB21 | HB-2 (HOMEOBOX-2); DNA binding / transcription factor (222 aa)
           
  0.509
Bra037154
AT5G66700 (E=3e-083) HB53, HB-8, ATHB53 | HB53; DNA binding / transcription factor (225 aa)
           
  0.509
Bra012093
AT5G66700 (E=4e-092) HB53, HB-8, ATHB53 | HB53; DNA binding / transcription factor (224 aa)
           
  0.509
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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