STRINGSTRING
Bra005504 protein (Brassica rapa) - STRING interaction network
"Bra005504" - AT2G33340 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005504AT2G33340 (E=3e-286) | nucleotide binding / ubiquitin-protein ligase (525 aa)    
Predicted Functional Partners:
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
     
  0.994
Bra013431
AT1G80070 (E=0.0) SUS2, EMB33, EMB177, EMB14 | SUS2 (ABNORMAL SUSPENSOR 2) (2369 aa)
     
  0.987
Bra007287
AT4G15900 (E=4e-151) PRL1 | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1); basal transcription repressor/ nucleotide binding / protein binding (400 aa)
   
  0.987
Bra040091
AT3G26560 (E=5e-178) | ATP-dependent RNA helicase, putative (791 aa)
     
  0.986
Bra025211
AT3G26560 (E=0.0) | ATP-dependent RNA helicase, putative (1171 aa)
     
  0.986
Bra001999
AT2G16860 (E=2e-124) | GCIP-interacting family protein (298 aa)
       
  0.984
Bra005605
AT2G32600 (E=2e-111) | hydroxyproline-rich glycoprotein family protein (276 aa)
     
  0.983
Bra022357
AT3G18790 (E=4e-121) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Isy1-like splicing (InterPro-IPR009360); Has 1075 Blast hits to 879 proteins in 176 species- Archae - 8; Bacteria - 11; Metazoa - 379; Fungi - 177; Plants - 27; Viruses - 9; Other Eukaryotes - 464 (source- NCBI BLink). (297 aa)
     
  0.982
Bra019919
AT1G10580 (E=1e-303) | transducin family protein / WD-40 repeat family protein (565 aa)
   
0.981
Bra005086
AT2G38770 (E=0.0) EMB2765 | EMB2765 (EMBRYO DEFECTIVE 2765) (1501 aa)
     
  0.981
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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