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Bra005505 protein (Brassica rapa) - STRING interaction network
"Bra005505" - AT1G04520 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005505AT1G04520 (E=1e-120) PDLP2 | PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2) (318 aa)    
Predicted Functional Partners:
Bra001902
AT1G63590 (E=7e-073) | receptor-like protein kinase-related (314 aa)
           
  0.483
Bra019130
AT4G26020 (E=2e-084) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- embryo, flower, seed; EXPRESSED DURING- petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is- ATGRIP; protein binding (TAIR-AT5G66030.2); Has 14545 Blast hits to 10066 proteins in 618 species- Archae - 167; Bacteria - 1198; Metazoa - 6354; Fungi - 992; Plants - 404; Viruses - 34; Other Eukaryotes - 5396 (source- NCBI BLink). (284 aa)
           
  0.471
Bra005486
AT2G33550 (E=1e-128) | gt-2-related (318 aa)
           
  0.412
Bra023264
AT1G32400 (E=2e-095) TOM2A | TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding (281 aa)
           
  0.406
Bra010162
AT1G32400 (E=8e-107) TOM2A | TOM2A (TOBAMOVIRUS MULTIPLICATION 2A); protein binding (279 aa)
           
  0.406
Bra035941
AT5G61130 (E=6e-053) PDCB1 | PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1); callose binding / polysaccharide binding (199 aa)
     
   
  0.400
Bra029334
AT5G61130 (E=1e-067) PDCB1 | PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1); callose binding / polysaccharide binding (195 aa)
     
   
  0.400
Bra012981
AT5G61130 (E=2e-069) PDCB1 | PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1); callose binding / polysaccharide binding (222 aa)
     
   
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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