STRINGSTRING
Bra005512 protein (Brassica rapa) - STRING interaction network
"Bra005512" - AT2G33260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005512AT2G33260 (E=7e-153) | tryptophan/tyrosine permease family protein (489 aa)    
Predicted Functional Partners:
Bra017088
AT2G39130 (E=3e-235) | amino acid transporter family protein (546 aa)
           
  0.545
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
           
  0.485
Bra011774
AT4G37560 (E=4e-251) | formamidase, putative / formamide amidohydrolase, putative (454 aa)
         
  0.435
CYN
AT3G23490 (E=1e-084) CYN | CYN (CYANASE); DNA binding / cyanate hydratase/ hydro-lyase ; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide (168 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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