STRINGSTRING
Bra005516 protein (Brassica rapa) - STRING interaction network
"Bra005516" - AT3G22040 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005516AT3G22040 (E=3e-054) | receptor-like protein kinase-related (530 aa)    
Predicted Functional Partners:
Bra012079
AT5G66530 (E=1e-056) | aldose 1-epimerase family protein (489 aa)
     
  0.999
Bra037166
AT5G66540 (E=2e-178) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- cytosol, nucleolus, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro-IPR012173), Mpp10 protein (InterPro-IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species- Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source- NCBI BLink). ; Involved in nucleolar processing of pre-1 [...] (526 aa)
     
  0.998
Bra025791
AT5G66540 (E=3e-018) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- rRNA processing; LOCATED IN- cytosol, nucleolus, nucleus; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro-IPR012173), Mpp10 protein (InterPro-IPR007151); Has 76240 Blast hits to 38667 proteins in 1479 species- Archae - 252; Bacteria - 6537; Metazoa - 31185; Fungi - 9935; Plants - 3937; Viruses - 750; Other Eukaryotes - 23644 (source- NCBI BLink). (129 aa)
     
  0.998
Bra032998
AT1G33390 (E=0.0) | helicase domain-containing protein (1237 aa)
     
  0.998
Bra019144
AT4G25730 (E=2e-266) | FtsJ-like methyltransferase family protein ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (818 aa)
     
 
  0.991
Bra010451
AT4G25730 (E=3e-229) | FtsJ-like methyltransferase family protein (765 aa)
     
 
  0.991
Bra008798
AT5G13830 (E=1e-110) | FtsJ-like methyltransferase family protein (227 aa)
     
 
  0.991
Bra038690
AT3G11964 (E=0.0) | RNA binding (1948 aa)
     
  0.991
Bra034795
AT3G11964 (E=0.0) | RNA binding (1930 aa)
     
  0.991
Bra024202
AT4G28450 (E=7e-223) | nucleotide binding / protein binding (452 aa)
     
    0.989
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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