STRINGSTRING
Bra005518 protein (Brassica rapa) - STRING interaction network
"Bra005518" - AT5G28823 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005518AT5G28823 (E=3e-021) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- cultured cell; BEST Arabidopsis thaliana protein match is- zinc knuckle (CCHC-type) family protein (TAIR-AT2G07760.1); Has 99 Blast hits to 71 proteins in 22 species- Archae - 0; Bacteria - 18; Metazoa - 2; Fungi - 56; Plants - 20; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (162 aa)    
Predicted Functional Partners:
Bra029903
AT3G48540 (E=1e-116) | cytidine/deoxycytidylate deaminase family protein (226 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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