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Bra005523 protein (Brassica rapa) - STRING interaction network
"Bra005523" - AT2G33120 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005523AT2G33120 (E=3e-112) SAR1, VAMP722, ATVAMP722 | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) (223 aa)    
Predicted Functional Partners:
Bra039859
AT4G14455 (E=4e-057) ATBET12, BET12, ATBS14B, BS14B | ATBET12; SNAP receptor/ protein transporter (132 aa)
     
  0.963
Bra007383
AT3G58170 (E=1e-060) ATBS14A, ATBET11, BET11, BS14A | BS14A (BET1P/SFT1P-LIKE PROTEIN 14A); SNAP receptor/ protein transporter (132 aa)
     
  0.963
Bra003325
AT3G58170 (E=5e-044) ATBS14A, ATBET11, BET11, BS14A | BS14A (BET1P/SFT1P-LIKE PROTEIN 14A); SNAP receptor/ protein transporter (117 aa)
     
  0.963
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
       
  0.962
Bra032848
AT5G05760 (E=1e-019) SYP31, ATSED5, ATSYP31, SED5 | SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor (108 aa)
     
  0.956
Bra028370
AT3G24350 (E=5e-101) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (297 aa)
     
  0.956
Bra015036
AT3G24350 (E=6e-129) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (344 aa)
     
  0.956
Bra005866
AT5G05760 (E=9e-132) SYP31, ATSED5, ATSYP31, SED5 | SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor (340 aa)
     
  0.956
Bra001945
AT3G24350 (E=4e-108) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (367 aa)
     
  0.956
Bra005233
AT2G36900 (E=2e-100) MEMB11, ATMEMB11 | MEMB11 (MEMBRIN 11); SNAP receptor (226 aa)
     
  0.956
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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