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Bra005526 protein (Brassica rapa) - STRING interaction network
"Bra005526" - AT1G43670 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005526AT1G43670 (E=1e-089) | fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative (286 aa)    
Predicted Functional Partners:
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
       
  0.976
Bra014473
AT3G60750 (E=0.0) | transketolase, putative (735 aa)
   
 
  0.857
Bra007555
AT3G60750 (E=0.0) | transketolase, putative (738 aa)
   
 
  0.857
Bra004898
AT2G45290 (E=0.0) | transketolase, putative (736 aa)
   
 
  0.857
Bra003426
AT3G60750 (E=4e-140) | transketolase, putative (462 aa)
   
 
  0.857
Bra031848
AT5G65690 (E=0.0) PCK2, PEPCK | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding (667 aa)
     
   
  0.846
Bra024410
AT5G65690 (E=0.0) PCK2, PEPCK | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding (666 aa)
     
   
  0.846
Bra017856
AT4G37870 (E=0.0) PCK1, PEPCK | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding (665 aa)
     
   
  0.846
Bra011792
AT4G37870 (E=0.0) PCK1, PEPCK | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1); ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding (669 aa)
     
   
  0.846
Bra038519
AT2G22480 (E=1e-183) PFK5 | PFK5 (PHOSPHOFRUCTOKINASE 5); 6-phosphofructokinase ; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis (557 aa)
       
  0.772
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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