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Bra005531 protein (Brassica rapa) - STRING interaction network
"Bra005531" - AT2G33040 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005531AT2G33040 (E=2e-162) | ATP synthase gamma chain, mitochondrial (ATPC) (325 aa)    
Predicted Functional Partners:
Bra041120
ATCG00120 (E=1e-229) ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. ; Produces ATP from ADP in the presence of a proton gradient across the membrane (504 aa)
 
  0.999
Bra040490
AT2G07698 (E=1e-039) | ATP synthase alpha chain, mitochondrial, putative (99 aa)
 
  0.999
Bra028648
AT5G08680 (E=7e-263) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (555 aa)
 
  0.999
Bra009363
AT5G08670 (E=7e-276) | ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism ; Produces ATP from ADP in the presence of a proton gradient across the membrane (555 aa)
 
  0.999
Bra009360
AT5G08670 (E=3e-275) | ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism ; Produces ATP from ADP in the presence of a proton gradient across the membrane (553 aa)
 
  0.999
Bra006014
AT5G08680 (E=1e-215) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (738 aa)
 
  0.999
Bra006013
AT5G08690 (E=1e-281) | ATP synthase beta chain 2, mitochondrial ; Produces ATP from ADP in the presence of a proton gradient across the membrane (554 aa)
 
  0.999
Bra028649
AT5G08680 (E=6e-268) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (564 aa)
 
  0.999
Bra024969
AT5G47030 (E=4e-099) | ATP synthase delta’ chain, mitochondrial (203 aa)
   
  0.999
Bra022092
AT5G47030 (E=9e-098) | ATP synthase delta’ chain, mitochondrial (200 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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