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Bra005540 protein (Brassica rapa) - STRING interaction network
"Bra005540" - AT2G32960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005540AT2G32960 (E=8e-110) | tyrosine specific protein phosphatase family protein (251 aa)    
Predicted Functional Partners:
Bra033449
AT3G52180 (E=2e-165) ATPTPKIS1, DSP4, SEX4 | SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase (552 aa)
           
  0.472
Bra006908
AT3G52180 (E=8e-142) ATPTPKIS1, DSP4, SEX4 | SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase (353 aa)
           
  0.472
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
     
 
  0.439
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
     
 
  0.439
Bra039112
AT3G01513 (E=2e-014) | unknown protein (118 aa)
           
  0.412
Bra029881
AT3G10940 (E=4e-144) | protein phosphatase-related (286 aa)
           
  0.412
Bra028323
AT3G23610 (E=3e-078) | dual specificity protein phosphatase (DsPTP1) (249 aa)
           
  0.412
Bra026842
AT4G18593 (E=8e-015) | dual specificity protein phosphatase-related (369 aa)
           
  0.412
Bra020776
AT3G06110 (E=6e-081) MKP2 | MKP2 (MAPK PHOSPHATASE 2); MAP kinase phosphatase/ protein tyrosine/serine/threonine phosphatase (180 aa)
           
  0.412
Bra015154
AT2G04550 (E=9e-115) IBR5 | IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5); MAP kinase phosphatase/ protein tyrosine/serine/threonine phosphatase (259 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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