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Bra005544 protein (Brassica rapa) - STRING interaction network
"Bra005544" - AT4G33260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005544AT4G33260 (E=9e-181) CDC20.2 | CDC20.2; signal transducer (439 aa)    
Predicted Functional Partners:
Bra013534
AT4G21530 (E=0.0) | nucleotide binding (773 aa)
       
  0.996
Bra009117
AT5G05510 (E=1e-091) | protein kinase-related (453 aa)
     
  0.989
Bra005485
AT2G33560 (E=2e-163) | spindle checkpoint protein-related (374 aa)
     
  0.989
Bra031135
AT2G20635 (E=6e-112) | ATP binding / protein kinase/ protein serine/threonine kinase (475 aa)
     
  0.984
Bra015240
AT2G33560 (E=2e-071) | spindle checkpoint protein-related (232 aa)
     
  0.984
Bra025176
AT3G25980 (E=3e-024) | mitotic spindle checkpoint protein, putative (MAD2) (95 aa)
     
  0.982
Bra017340
AT3G25980 (E=2e-112) | mitotic spindle checkpoint protein, putative (MAD2) (209 aa)
     
  0.982
Bra035062
AT1G78770 (E=2e-291) APC6 | cell division cycle family protein (544 aa)
     
  0.979
Bra024475
AT2G18290 (E=1e-102) APC10 | anaphase-promoting complex, subunit 10 family / APC10 family ; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (192 aa)
     
  0.978
Bra039034
AT2G20000 (E=0.0) HBT, CDC27b | HBT (HOBBIT); binding (743 aa)
     
  0.976
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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