STRINGSTRING
Bra005547 protein (Brassica rapa) - STRING interaction network
"Bra005547" - AT2G32900 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005547AT2G32900 (E=5e-186) ATZW10 | ATZW10 (753 aa)    
Predicted Functional Partners:
Bra001616
AT3G15980 (E=1e-093) | coatomer protein complex, subunit beta 2 (beta prime), putative (728 aa)
     
  0.927
Bra018119
AT3G47700 (E=0.0) MAG2 | MAG2 (maigo2) (788 aa)
     
  0.927
Bra018627
AT1G08400 (E=0.0) | chromosome structural maintenance protein-related (776 aa)
     
  0.923
Bra009753
AT5G24350 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Secretory pathway Sec39 (InterPro-IPR013244); Has 170 Blast hits to 130 proteins in 45 species- Archae - 0; Bacteria - 5; Metazoa - 90; Fungi - 13; Plants - 54; Viruses - 0; Other Eukaryotes - 8 (source- NCBI BLink). (2370 aa)
     
  0.908
Bra007084
AT3G54630 (E=6e-198) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plant structures; EXPRESSED DURING- 6 growth stages; CONTAINS InterPro DOMAIN/s- Kinetochore protein Ndc80 (InterPro-IPR005550); Has 19800 Blast hits to 12108 proteins in 845 species- Archae - 345; Bacteria - 1709; Metazoa - 11031; Fungi - 1499; Plants - 797; Viruses - 39; Other Eukaryotes - 4380 (source- NCBI BLink). (574 aa)
     
  0.777
Bra014226
AT1G49910 (E=9e-183) | WD-40 repeat family protein / mitotic checkpoint protein, putative (339 aa)
     
 
  0.776
Bra038307
AT1G69400 (E=6e-145) | transducin family protein / WD-40 repeat family protein (378 aa)
     
 
  0.756
Bra038220
AT3G19590 (E=1e-181) | WD-40 repeat family protein / mitotic checkpoint protein, putative (340 aa)
     
 
  0.756
Bra025176
AT3G25980 (E=3e-024) | mitotic spindle checkpoint protein, putative (MAD2) (95 aa)
       
  0.747
Bra017340
AT3G25980 (E=2e-112) | mitotic spindle checkpoint protein, putative (MAD2) (209 aa)
       
  0.747
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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