STRINGSTRING
Bra005549 protein (Brassica rapa) - STRING interaction network
"Bra005549" - AT2G32890 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005549AT2G32890 (E=3e-012) RALFL17 | RALFL17 (RALF-LIKE 17); signal transducer (76 aa)    
Predicted Functional Partners:
Bra034361
AT1G21990 (E=2e-125) | F-box family protein (355 aa)
           
  0.574
Bra004969
AT2G40316 (E=8e-086) | unknown protein (297 aa)
           
  0.574
Bra038866
AT3G50900 (E=1e-044) | unknown protein (113 aa)
           
  0.542
Bra036851
AT3G50900 (E=7e-043) | unknown protein (160 aa)
           
  0.542
Bra011687
AT4G36500 (E=8e-057) | unknown protein (122 aa)
           
  0.542
Bra010557
AT4G36500 (E=5e-055) | unknown protein (120 aa)
           
  0.542
Bra017244
AT2G36340 (E=1e-051) | DNA-binding storekeeper protein-related (377 aa)
           
  0.537
Bra021866
AT2G33640 (E=5e-235) | zinc finger (DHHC type) family protein (560 aa)
           
  0.502
Bra023013
AT2G35550 (E=1e-099) BPC7, BBR, ATBPC7 | BPC7 (BASIC PENTACYSTEINE 7); DNA binding / transcription factor (270 aa)
           
  0.478
Bra026589
AT2G02540 (E=4e-093) ATHB21, ZFHD4 | ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21); DNA binding / transcription activator/ transcription factor (300 aa)
           
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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