STRINGSTRING
Bra005552 protein (Brassica rapa) - STRING interaction network
"Bra005552" - AT2G32850 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005552AT2G32850 (E=5e-177) | protein kinase family protein (583 aa)    
Predicted Functional Partners:
Bra000742
AT4G11360 (E=1e-058) RHA1B | RHA1B; protein binding / zinc ion binding (308 aa)
     
  0.960
Bra037603
AT5G22780 (E=0.0) | adaptin family protein (1014 aa)
     
  0.958
Bra002427
AT5G22780 (E=0.0) | adaptin family protein (1007 aa)
     
  0.958
Bra035228
AT4G11380 (E=0.0) | beta-adaptin, putative ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (899 aa)
     
  0.957
Bra019302
AT4G23460 (E=0.0) | beta-adaptin, putative ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (880 aa)
     
  0.957
Bra006100
AT5G11490 (E=0.0) | adaptin family protein ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (840 aa)
     
  0.957
Bra027439
AT1G47830 (E=3e-075) | clathrin coat assembly protein, putative (154 aa)
       
  0.937
Bra015600
AT1G47830 (E=6e-076) | clathrin coat assembly protein, putative (157 aa)
       
  0.937
Bra038937
AT5G35200 (E=2e-246) | epsin N-terminal homology (ENTH) domain-containing protein (550 aa)
     
  0.838
Bra036250
AT4G02650 (E=1e-230) | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (601 aa)
     
  0.838
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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