STRINGSTRING
Bra005555 protein (Brassica rapa) - STRING interaction network
"Bra005555" - AT2G32780 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005555AT2G32780 (E=1e-123) UBP1, ATUBP1 | UBP1 (UBIQUITIN-SPECIFIC PROTEASE 1); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding (1166 aa)    
Predicted Functional Partners:
Bra031230
AT2G22090 (E=3e-081) UBA1A | UBP1 interacting protein 1a (UBA1a) (307 aa)
       
 
  0.655
Bra016954
AT2G41060 (E=5e-128) | RNA recognition motif (RRM)-containing protein (440 aa)
       
 
  0.625
Bra007277
AT3G56860 (E=5e-150) UBA2A | UBP1 interacting protein 2a (UBA2a) (449 aa)
       
 
  0.625
Bra020761
AT3G06290 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro-IPR005062); BEST Arabidopsis thaliana protein match is- SAC3/GANP family protein (TAIR-AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species- Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source- NCBI BLink). (1647 aa)
     
      0.623
Bra003181
AT3G54380 (E=1e-155) | SAC3/GANP family protein (385 aa)
     
      0.623
Bra001190
AT3G06290 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro-IPR005062); BEST Arabidopsis thaliana protein match is- SAC3/GANP family protein (TAIR-AT3G54380.1); Has 1341 Blast hits to 841 proteins in 168 species- Archae - 0; Bacteria - 24; Metazoa - 448; Fungi - 228; Plants - 85; Viruses - 0; Other Eukaryotes - 556 (source- NCBI BLink). (1640 aa)
     
      0.623
Bra013784
AT4G24270 (E=0.0) | RNA recognition motif (RRM)-containing protein (823 aa)
       
      0.616
Bra039453
AT3G05210 (E=1e-172) ERCC1, UVR7 | ERCC1; 5’-flap endonuclease (398 aa)
       
    0.613
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
  0.606
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
  0.606
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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