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Bra005560 protein (Brassica rapa) - STRING interaction network
"Bra005560" - AT2G32730 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005560AT2G32730 (E=0.0) | 26S proteasome regulatory subunit, putative (1008 aa)    
Predicted Functional Partners:
Bra016472
AT1G76010 (E=6e-061) | nucleic acid binding (645 aa)
     
  0.998
Bra015799
AT1G75990 (E=3e-224) | 26S proteasome regulatory subunit S3, putative (RPN3) (482 aa)
     
  0.998
Bra012219
AT1G76010 (E=1e-035) | nucleic acid binding (214 aa)
     
  0.998
Bra040569
AT1G53750 (E=3e-238) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (433 aa)
     
  0.996
Bra039688
AT1G53750 (E=5e-247) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (426 aa)
     
  0.996
Bra030922
AT1G53750 (E=3e-243) RPT1A | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A); ATPase (426 aa)
     
  0.996
Bra016824
AT1G11670 (E=1e-069) | MATE efflux family protein (345 aa)
     
  0.996
Bra010366
AT4G28470 (E=0.0) RPN1B, ATRPN1B | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B); binding / enzyme regulator (886 aa)
     
  0.996
Bra008312
AT5G45500 (E=1e-049) | unknown protein (300 aa)
     
  0.996
Bra003811
AT2G20580 (E=2e-007) RPN1A, ATRPN1A | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A); binding / enzyme regulator (246 aa)
     
  0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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