STRINGSTRING
Bra005565 protein (Brassica rapa) - STRING interaction network
"Bra005565" - AT2G32710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005565AT2G32710 (E=8e-029) KRP4, ACK2, ICK7 | KRP4; cyclin binding / cyclin-dependent protein kinase inhibitor (226 aa)    
Predicted Functional Partners:
Bra034614
AT2G27960 (E=4e-040) CKS1, CKS1AT | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1); cyclin-dependent protein kinase/ protein binding ; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (88 aa)
       
 
  0.932
Bra034380
AT2G27970 (E=2e-037) CKS2 | CKS2 (CDK-subunit 2); cyclin-dependent protein kinase/ cyclin-dependent protein kinase regulator ; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (81 aa)
       
 
  0.932
Bra037900
AT1G14810 (E=4e-034) | semialdehyde dehydrogenase family protein (151 aa)
       
      0.902
Bra026186
AT1G14810 (E=1e-196) | semialdehyde dehydrogenase family protein (375 aa)
       
      0.902
Bra020378
AT5G58290 (E=1e-223) RPT3 | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3); ATPase (404 aa)
       
      0.902
Bra016680
AT1G14810 (E=4e-182) | semialdehyde dehydrogenase family protein (344 aa)
       
      0.902
Bra006775
AT5G58290 (E=4e-113) RPT3 | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3); ATPase (391 aa)
       
      0.902
Bra002662
AT5G58290 (E=5e-223) RPT3 | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3); ATPase (404 aa)
       
      0.902
Bra029578
AT5G20920 (E=4e-098) EIF2 BETA | EIF2 BETA; translation initiation factor (264 aa)
       
      0.900
Bra020136
AT5G20920 (E=1e-106) EIF2 BETA | EIF2 BETA; translation initiation factor (272 aa)
       
      0.900
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (29%) [HD]