STRINGSTRING
Bra005575 protein (Brassica rapa) - STRING interaction network
"Bra005575" - AT2G32240 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005575AT2G32240 (E=2e-208) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- response to cadmium ion; LOCATED IN- plasma membrane; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Prefoldin (InterPro-IPR009053); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G05320.3); Has 221693 Blast hits to 95553 proteins in 2574 species- Archae - 2848; Bacteria - 44259; Metazoa - 97474; Fungi - 15490; Plants - 8386; Viruses - 1229; Other Eukaryotes - 52007 (source- NCBI BLink). (1424 aa)    
Predicted Functional Partners:
Bra012247
AT1G20760 (E=0.0) | calcium-binding EF hand family protein (1000 aa)
           
  0.473
Bra031332
AT3G22200 (E=2e-266) POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase/ 4-aminobutyrate-pyruvate transaminase (500 aa)
           
  0.410
Bra023845
AT3G22200 (E=1e-259) POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase/ 4-aminobutyrate-pyruvate transaminase (501 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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