STRINGSTRING
Bra005576 protein (Brassica rapa) - STRING interaction network
"Bra005576" - AT3G45040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005576AT3G45040 (E=7e-264) | phosphatidate cytidylyltransferase family protein (565 aa)    
Predicted Functional Partners:
Bra028851
AT5G03080 (E=5e-107) | phosphatidic acid phosphatase-related / PAP2-related (222 aa)
     
  0.948
Bra009551
AT5G03080 (E=1e-101) | phosphatidic acid phosphatase-related / PAP2-related (226 aa)
     
  0.948
Bra012235
AT1G20575 (E=6e-134) | dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative (247 aa)
       
  0.944
Bra005029
AT2G39630 (E=6e-155) | glycosyl transferase family 2 protein (414 aa)
       
  0.940
Bra000139
AT2G39630 (E=6e-168) | glycosyl transferase family 2 protein (336 aa)
       
  0.940
Bra014644
AT3G57220 (E=7e-188) | UDP-GlcNAc-dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative (419 aa)
     
 
  0.939
Bra007312
AT3G57220 (E=2e-190) | UDP-GlcNAc-dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative (422 aa)
     
 
  0.939
Bra004624
AT2G41490 (E=8e-189) GPT | GPT (UDP-GLCNAC%3ADOLICHOL+PHOSPHATE+GLCNAC-1-P+TRANSFERASE); UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (422 aa)
     
 
  0.939
Bra015919
AT1G74340 (E=1e-033) | dolichol phosphate-mannose biosynthesis regulatory protein-related (80 aa)
     
 
  0.903
Bra008145
AT1G74340 (E=3e-033) | dolichol phosphate-mannose biosynthesis regulatory protein-related (80 aa)
     
 
  0.903
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]